*=co-first authors, †=corresponding authors

  1. Roodgar, N.R.*, B. H. Good*†, N.R. Garud, S. Martis, M. Avula, W. Zhou, S. Lancaster, H. Lee, A. Babveyh, S. Nesamoney, K. S. Pollard, and M. P. Snyder. Longitudinal linked read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment. biorXiv (2019).

  2. Garud, N. R.*†, B. H. Good*†, O. Hallatschek, and K. S. Pollard. Evolutionary dynamics of bacteria in the gut microbiome within and across hosts. PLoS Biology 17(1):e3000102 (2019).

    See Primer article by I. Gordo.

  3. Good, B.H.+ and O. Hallatschek. Effective models and the search for quantitative principles in microbial evolution. Current Opinions in Microbiology 45:203-212 (2018).

  4. Good, B. H.+, S. Martis, and O. Hallatschek. Adaptation limits ecological diversification and promotes ecological tinkering during the competition for substitutable resources. PNAS 115:E10407-E10416 (2018).

  5. Cvijovic, I., B. H. Good, and M. M. Desai. The effect of strong purifying selection on genetic diversity. Genetics 209:1235-1278 (2018).

  6. Good, B. H.*, M. J. McDonald*, J. E. Barrick, R. E. Lenski, and M. M. Desai. The Dynamics of Molecular Evolution Over 60,000 Generations. Nature 551:45-50 (2017).

    See News and Views article by J. Plotkin.

  7. Good, B. H. and M. M. Desai. Evolution of mutation rates in rapidly adapting asexual populations. Genetics 204:1249-1266 (2016).

  8. Cvijovic, I.*, B. H. Good*, E. R. Jerison, and M. M. Desai. Fate of a mutation in a fluctuating environment. PNAS 112:E5021-E5028 (2015).

  9. Rice, D. P., B. H. Good, and M. M. Desai. The evolutionarily stable distribution of fitness effects. Genetics 200:321-329 (2015).

  10. Good, B. H. and M. M. Desai. The impact of macroscopic epistasis on long-term evolutionary dynamics. Genetics 199:177-190 (2015).

  11. Good, B. H. and M. M. Desai. Deleterious passengers in adapting populations. Genetics 198:1183-1208 (2014).

  12. Frenkel, E., B.H. Good, and M. M. Desai. The fates of mutant lineages and the distribution of fitness effects of beneficial mutations in laboratory budding yeast populations. Genetics 196:1217-1226 (2014).

  13. Good, B. H., A.M. Walczak, R. A. Neher, and M. M. Desai. Genetic diversity in the interference selection limit. PLoS Genetics 10:e1004222 (2014).

  14. Good, B. H. and M. M. Desai. Fluctuations in fitness distributions and the effects of weak selection on sequence evolution. Theoretical Population Biology 85:86-102 (2013).

  15. Good, B. H., I. M. Rouzine, D. J. Balick, O. Hallatschek, and M. M. Desai. Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations. PNAS 109:4950-4955 (2012).

    See commentary article by M. Lässig

  16. Good, B. H., Y.-A. de Montjoye, and A. Clauset. The performance of modularity maximization in practical contexts. Physical Review E 81, 046106 (2010)